scdefg: Differential expression on single cell RNA sequencing data

This app uses scvi-tools, code is available on GitHub.

  • Select groups of interest and run a differential expression comparison.
  • Prior to selection you can filter the view of the groups to select.
  • For best results select a total of more than 50 cells each group.
  • Hold shift to select multiple rows.
  • Results take about 15s to compute.
  • You will get an interactive volcano plot, MA plot and tables with DE values.
  • To highlight genes add one gene per line below.
Processing job...takes about 15s
Select group 1 cells
Select group 2 cells

Differential Expression Results - Volcano Plot

Differential Expression Results - MA Plot

Enriched genes

Depleted genes